Since 2015, I head of the Master of Sciences and Digital Technology for healthcare Specialty Bioinformatics, Knowledge, Data (Master Sciences et Numérique pour la Santé (SNS), Parcours Bioinformatique, Connaissance et Données (BCD), sns.edu.umontpellier.fr
Some computer science tips:
- Linux introduction: http://linuxcommand.org/
- Regular expression interface: https://regex101.com/
- To learn R: https://swirlstats.com/
- A tour of Go programming language: https://tour.golang.org/welcome/1
From January 2019 to September 2019, the CNRS grants me a full-time teaching break.
- M2 Bioinformatics / Statistics
- [HMSN305] Omics – Head: Anna-Sophie Fiston-Lavier. Keywords: Sequencing (NGS), Genomics, Transcriptomics, Proteomics, MetaGenomics.
- M2 Medical Biology
- [HMBS307] (TC3) Bioinformatics and System Biology – Heads: Ovidiu Radulescu, Alain Chavanieu and Stefano Trapani. Keywords: Bioinformatics, Genomics, Transciptomics, Proteomics, Statistics, Medical diagnostics.
- M1 Computer sciences
- [HMIN114] Algorithms and Programming – Heads: Anne-Muriel Chifolleau and Alban Mancheron. Keywords: Unix, Emacs.
- [HMIN113M] System – Heads: Pierre Pompidor. Keywords: Bash, Python, Web.
- L3 Biology
- [HLBE605] Evolutionary Biology – Head: Benoit Nabholz. Keywords: Genetics, molecular biology, genome evolution, selection, transposable elements, sequencing technologies.
- L2 Biology / Computer sciences
- [HLIN404] Bioinformatics for biologists – Head: Anna-Sophie Fiston-Lavier. Keywords: System, Sequence analysis, Database, Python, BioPython, Phylogeny.
- L1 Computer sciences / PolyTech
- [HLIN101] Algorithms, Programming and System Head: Philippe Janssen. Keywords: Unix, Emacs, C/C++.
Previous teaching
- 2018-2016 Licence/Master/Polytech – Algorithms and Optimization for advanced Bioinformatics (Mapping, Assembly, Structural variants) – Omics (Sequencing technologies, BigData, « Montpellier OmicsDays #5 ») – Algorithms and Programming (Unix, Emacs) – Bioinformatics for biologists (Python) -System (Unix, Python, Perl, Html, php, css) – Bioinformatics and System Biology (Bioinformatics, Genomics, Transciptomics, Proteomics, Statistics, Medical diagnostics) – Evolutionary Biology (Bio-Eco dept: genome evolution, selection, transposable elements, sequencing)
- 2015 Licence/Master/Polytech – Algorithms and Optimization for advanced Bioinformatics (Mapping, Assembly, Structural variants) – Omics (Sequencing technologies, BigData, « Montpellier OmicsDays #4 ») – Algorithms and Programming (Unix, Emacs) – Bioinformatics for biologists (Python) – System, Web and information (bash, css, frameworks, data compression, machine learning) – Algorithms, Programming and System (C++) – Bioinformatics and System Biology (Bioinformatics, Genomics, Transciptomics, Proteomics, Statistics, Medical diagnostics) – Evolutionary Biology (Bio-Eco dept: genome evolution, selection, transposable elements, sequencing)
- 2014 L1/L2/M1/M2 – Algorithms and Optimization for advanced Bioinformatics (Mapping, Assembly, Structural variants) – Omics (Sequencing technologies, BigData, « Montpellier OmicsDays #3 ») – Advanced Web Technologies – Algorithms and Programming (C++) – Bioinformatics for biologists (Python)- Algorithms, Programming and System (C++)
- 2013 L1/M1/M2/Polytech – Algorithms, Programming and System (OCaml) – Algorithms and Programming – e-applications (Golang/Cloud) – M1 Programming for advanced Bioinformatics for NGS analysis – Omics (« Montpellier OmicsDays #2 ») – Algorithms and Optimization for advanced Bioinformatics –
- 2012 International Bioinformatic Workshop – Stanford University. Next-generation sequencing data analysis Cloud computing solutions Detection of the copy-number variations such as transposable elements
- 2006-2007 TA in Cellular Imagery – Paris 7 University. Bioinformatics (ImageJ software)
- 2005-2007 TA in Informatics – Paris 7 University. Informatics / L1/L2 ~20 students
