Since 2015, I head of the Master of Sciences and Digital Technology for healthcare Specialty Bioinformatics, Knowledge, Data (Master Sciences et Numérique pour la Santé (SNS), Parcours Bioinformatique, Connaissance et Données (BCD), sns.edu.umontpellier.fr)
- M2 Bioinformatics / Statistics
- [HMSN305] Omics – Head: Anna-Sophie Fiston-Lavier. Keywords: Sequencing (NGS), Genomics, Transcriptomics, Proteomics, MetaGenomics.
- M2 Medical Biology
- [HMBS307] (TC3) Bioinformatics and System Biology – Heads: Ovidiu Radulescu, Alain Chavanieu and Stefano Trapani. Keywords: Bioinformatics, Genomics, Transciptomics, Proteomics, Statistics, Medical diagnostics.
- M1 Computer sciences
- [HMIN114] Algorithms and Programming – Heads: Anne-Muriel Chifolleau and Alban Mancheron. Keywords: Unix, Emacs.
- [HMIN113M] System – Heads: Pierre Pompidor. Keywords: Bash, Python, Web.
- [HMSN204] Computer Sciences and Bioinformatic tools – Heads: Anne-Muriel Chifolleau. Keywords: Algorithms, Perl programming, Bioinformatics, Genomics, Metagenomics.
- L3 Biology
- [HLBE605] Evolutionary Biology – Head: Benoit Nabholz. Keywords: Genetics, molecular biology, genome evolution, selection, transposable elements, sequencing technologies.
- L2 Biology / Computer sciences
- [HLIN404] Bioinformatics for biologists – Head: Anna-Sophie Fiston-Lavier. Keywords: System, Sequence analysis, Database, Python, BioPython, Phylogeny.
- L1 Computer sciences / PolyTech
- [HLIN101] Algorithms, Programming and System Head: Philippe Janssen. Keywords: Unix, Emacs, C/C++.
Previous
- 2016 L1/L2/M1/M2/Polytech – Algorithms and Optimization for advanced Bioinformatics (Mapping, Assembly, Structural variants) – Omics (Sequencing technologies, BigData, « Montpellier OmicsDays #5 ») – Algorithms and Programming (Unix, Emacs) – Bioinformatics for biologists (Python) – System (Unix, Python, Perl, Html, php, css) – Bioinformatics and System Biology (Bioinformatics, Genomics, Transciptomics, Proteomics, Statistics, Medical diagnostics) – Evolutionary Biology (Bio-Eco dept: genome evolution, selection, transposable elements, sequencing)
- 2015 L1/L2/M1/M2/Polytech – Algorithms and Optimization for advanced Bioinformatics (Mapping, Assembly, Structural variants) – Omics (Sequencing technologies, BigData, « Montpellier OmicsDays #4 ») – Algorithms and Programming (Unix, Emacs) – Bioinformatics for biologists (Python) – System, Web and information (bash, css, frameworks, data compression, machine learning) – Algorithms, Programming and System (C++) – Bioinformatics and System Biology (Bioinformatics, Genomics, Transciptomics, Proteomics, Statistics, Medical diagnostics) – Evolutionary Biology (Bio-Eco dept: genome evolution, selection, transposable elements, sequencing)
- 2014 L1/L2/M1/M2 – Algorithms and Optimization for advanced Bioinformatics (Mapping, Assembly, Structural variants) – Omics (Sequencing technologies, BigData, « Montpellier OmicsDays #3 ») – Advanced Web Technologies – Algorithms and Programming (C++) – Bioinformatics for biologists (Python)- Algorithms, Programming and System (C++)
- 2013 L1/M1/M2/Polytech – Algorithms, Programming and System (OCaml) – Algorithms and Programming – e-applications (Golang/Cloud) – M1 Programming for advanced Bioinformatics for NGS analysis – Omics (« Montpellier OmicsDays #2 ») – Algorithms and Optimization for advanced Bioinformatics –
- 2012 International Bioinformatic Workshop – Stanford University. Next-generation sequencing data analysis Cloud computing solutions Detection of the copy-number variations such as transposable elements
- 2006-2007 TA in Cellular Imagery – Paris 7 University. Bioinformatics (ImageJ software)
- 2005-2007 TA in Informatics – Paris 7 University. Informatics / L1/L2 ~20 students
